Scaffold Ga0114336_1040031

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1040031
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5339
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005740	Metagenome / Metatranscriptome	391	N
F021287	Metagenome / Metatranscriptome	219	Y
F094883	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10400312	F094883	AGGA	MAIGLGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAKEQQQAIQQNIASLEPATELAKKTTAAEQSQLESQLRRAIPGYDQLVSQAGQNIAASLRGEISPEVSAQVQRSTAGRALSGGFGAGSGFGRALTARDLGLTGMQIQNQGLAQAQNFIQQQRAFGMVQPFSVSSMFITPAQRIGAIQEQQARMYGRDLTAAQVAAAPSPMQQAAQTALTNFGGVAGGALSQYGMYQGLMAQNPANLYSTPPSGSPYAGAGATTGSDMSITGIIPEVG*
Ga0114336_10400313	F005740	GAG	MKLIVQDIRSTIARVIGVCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQETGYGLLNSGDACVGKQLIDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGAWIDGEKLTLALPYVQSTKKFIELTGVIRQATNTVSRLYEFNATTSLETDLAVYDPDETLPQYRRSLLTDRCQNDEDRPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF*
Ga0114336_10400314	F021287	GGA	MPNLTLITLTPPSLPVGYCPLNYQTLANDIISGTQATFNSSIGNSFFNFGPSTPALNNQVYPWLDEDGNWWVFNGGYWNRKNPVPPGTFERRIFIGTTNDLLSYDGGDGTSNPPTNYTGAMWEVDTAFQARFPVGAGTFAASGVVTVNGTTTSTAIVGEDQHLLTTAEMHNNLPPFYGVYFIKRSARVYYTK*