Scaffold Ga0114336

Basic Information
Taxon OID	3300008261 Open in IMG/M
Scaffold ID	Ga0114336_1038909 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2558
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

2558

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.236	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.236

Alt. (m)

Depth (m)

5.7

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F001897	Metagenome / Metatranscriptome	620	Y
F002433	Metagenome / Metatranscriptome	559	Y
F005503	Metagenome / Metatranscriptome	398	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10389093	F002433	N/A	MSVGEWMAVGGFAIAMLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIEQRLDQLMLEIAIKK*
Ga0114336_10389094	F005503	GGAG	MTSSEIGLFVLMAIACILWAIVSYSVGYKEGHKEGYQRGKAVGRHISAQAVK*
Ga0114336_10389095	F001897	AGGCGG	MAFMDSYEGNKQRTDRWIATYPQGRLETLIVEFDAEKGYVLVQAKAYRNQLETEPAGVDYAHGYLAAYPEKMRRWMIEDTCTSALMRVMALVMGGTEKATQEVMAQVKNQTPAVEYDYWSTKFGDVPSYQTRDEAEQAEPISWDTSEQKAVAPDAVPSCSHGSMRWNQSKPDAPKAWAGYFCSEKIKEKQCKPQWYVLTSDGTFKPQV*
Ga0114336_10389096	F000403	AGG	MSDYMEIINPQTRTAKLMFQGKIIEEYKIEQCDKCSKLMKFDQFGYQKGYGGENIIWFCGGCR*
Ga0114336_10389097	F000903	GGAGG	MINRIEEVQCMIAAIQHCHDRNADHPTRFQKNLSWFEYVAQMAESMAAELVVAKRLGYDYQPGITWDKSKADVGEHIEVKWSANPTSNLWIQESDRHDRDIAVLVTGHSPKMHIIGWMPVAVAKKPRYKNTSQDNWTVPQANLQPIETLARSNYAHPAI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114336_1038909

Overview

Ecosystem & Geography

Associated Families

Sequences