Scaffold Ga0114336_1026612

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1026612
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6910
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002071	Metagenome / Metatranscriptome	596	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003690	Metagenome / Metatranscriptome	473	Y
F019325	Metagenome / Metatranscriptome	230	Y
F024319	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_102661214	F002245	AGG	MSNLVKVPHTVVFEAVIDLDKIPANLLPALIALDEATMTEMCKGATLHALSMSNTLEVANNGNYWAELTVKEGN*
Ga0114336_102661216	F002071	AGGA	MTNATLEVGQTYTTTTSGITGIIKAVDNHPSGVNRILLDVNGKERWTSTPNN*
Ga0114336_10266124	F019325	AGGAG	MTQLTETLYSTIVHDFHNGGVKSSYGLDTYTRKAILKALLSSKGCECINCLTKEVK*
Ga0114336_10266125	F024319	AGGAGG	MTNRIWESRNDYQTNSDYVACSSGCGRVTAWTLCVMCGGEYATHALVNVR*
Ga0114336_10266126	F003690	GGAG	MIPNGFELHITNEYGFELDSFLGAIYLPWHTIAIATALLIAYKIYKRKKNK*
Ga0114336_10266128	F000447	AGG	MGYIEIFRLDEEGAGWVDLSEATPDEMLTLEIGLFQEGAL*