Scaffold Ga0114336_1021623

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1021623
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8043
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F010317	Metagenome / Metatranscriptome	305	Y
F019468	Metagenome / Metatranscriptome	229	N
F053239	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_102162310	F053239	GAG	MKYKMFVLLEGKKNLIASTNNFSDFENLMTEFEKFEIQWEVTENGDTVFSTFASVLN*
Ga0114336_10216233	F010317	AGTAGG	MKKIYIEKLSEVSGGLPARSMEDHIMGKPNDNYSSIPVEYNLEGVLSYDIEVGKSVVVGRTKRNGVEAYGVFSTSRVTEVGNNYFKTMNSVYLYKYLSL*
Ga0114336_10216234	F019468	N/A	MTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRKALNIDNTYFPNYPPGVRKFDDDKTTPLNPTTPSIPYPYDTYPWYTPKYPNDTGTPYWTGPTTTCGTINAGEGNCVMDTNWQPNLCNNVKSSTGINFLSDDDNNKWCSSVAEAISKLTAKKDNTTTTSEGIKVG*
Ga0114336_10216236	F005293	N/A	MVNDSVPFVPTRDDLIGYISDTHKTIHGFRPRPVWSELTYEQLDKWGRELAAEVVIYRKQEVVRNRIARGLRRAQQRAWVEKKRSYFTGSTFTIGNVVNF*