Scaffold Ga0114336_1014355

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1014355
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4819
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038107	Metagenome	166	Y
F050170	Metagenome	145	N
F074408	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10143551	F038107	N/A	MSNIRNPYNNVGQYPPEPFGSVVDKPSLIETAGLNPYNFQDFGQEFSAYNDVQRVQRAAFPINRTNEFNTDTSNKYFPRIQPLFYQGDAQNYSILNNPAEQNQNLDMASQRTYIKPFYTTKEQFGSVLPIEVNNSILPLGPIYIKKTVLTTN*
Ga0114336_101435510	F074408	N/A	MNNFIDVCKLLGCYNDKDVYLYTSSKFKSNSIFYSPNYYLLPKWADPEKLTLIQAVKIINFRMKHKNNDSINVKYLMEESKNIDTLIQEIKEK*
Ga0114336_10143556	F050170	N/A	MTDKINLYVNSSYRKKDETTTNLKVIVPSGLIKSYGKDYFTLSITSFSCFNTLYQMDETNSDFNIIIRDVSNNIFKYLFFSFVDCVGNPNVYDIRDELNSLLNGYISVTYDKIKNLFLFTRTKAQDANNNKIYLKNKTCGNFLGFPKDYINKEIEITADGVYSYQPINVIYHQQILINIDGDIQMAINNLDNKNSDVLEASSVLFMKPIDINKNQLIMYENYDGNASFQYKISQKDTINQINIRVTNQDNEEITTLGDWQLTMQLERHDEDITESLLTQIKEYISYIFLIIGTYLS*