Scaffold Ga0114336_1010488

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1010488
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11724
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (63.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F013878	Metagenome / Metatranscriptome	267	Y
F028166	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_101048812	F000671	GAGG	MEKILCYSCNKSKNKLEAKKSALLPINLLICETCISSKLEPRWVVILAGRSNGSDYVKEFIIKRRYLGNEITASELLI*
Ga0114336_101048825	F028166	AGGAG	MTDGINLTGFNETKPGATNNLDLNPTGQAPASAFPATDKSSQDGAGLGNNGK*
Ga0114336_101048826	F001280	N/A	VCVECGCEAFGSETGITPVTINDVSRDGESGLTLNMTSTPEQTRQFINE*
Ga0114336_101048827	F001176	N/A	MSENGTGMATPPNNQPSGAVTSQETARKKPTQGKFRSGITTPRPPTKVDTNKHGIRRETVLGPKKTGRPKKV*
Ga0114336_10104888	F013878	GAG	MLNLTELGVEVFIKKAKNVTPYWDNYDLVIWKKDSGGFTSIKGMFKENTWGTAERIAVAANGTWKLPTKYVRHFK*