Scaffold Ga0114336_1009528

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1009528
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6208
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F006846	Metagenome / Metatranscriptome	363	Y
F022414	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_100952812	F006846	N/A	MESLHGKRIQMRMLIEFVERYLMRPKRLREAIEAVVHENDELLRRLSEYKEEGPTNLTWAEGDRWYGWTYNKSKGRYYFDDIGNESLMGLWEDQWAREEAEAK*
Ga0114336_10095282	F000263	AGG	MNREDIGLPPHLQRMVNADVSGLDILHGELKNLMLIAEQDLASAIEQEELSEEAMDSMVRTECEGRLDTLVELYQLTYDLSFAIGIRTENRKDGHL*
Ga0114336_10095284	F000441	AGGAGG	MKMSDEYINDQLSTAQKLLWGGSETENIEAHNIISKLIKDRVEQISI*
Ga0114336_10095285	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVALQEAADKGITFTAEAPVKKAK*
Ga0114336_10095286	F022414	GAGG	MAKTTEIKLAEQLANLTDDHWFNPAIFGRYLAEQPMHTIDRVMEMVAYIISEQAKTYQVHKVRGTSSEGLLLANELNECIKAYQEVNLISNLKLPKPTVYNVKPKEETKRIQFGWREDKDPFQ*