Scaffold Ga0114336_1009213

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1009213
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6328
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020322	Metagenome	224	N
F043821	Metagenome	155	N
F057201	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_100921310	F020322	GAGG	MSNDDQIWNAFIKAIPAQDKARHDLENFQAKLLKNALQEIEDLNLEITQHKAEIVQLEEVLQGYSSLLHDVTQDRDRFRDDWKAMTQELSRWRS*
Ga0114336_100921311	F043821	N/A	MTDDDSYQVHVYPKGRKVTLVFIGDCWDKYNYELTYNSFVAPLVRRYSSDWMTWGDRETIAEGFYQWTWEKRELDIKGDG*
Ga0114336_10092139	F057201	GAGG	MQLIGKLIASAIIVGLITLVIEAIIYEREVTAKSKQERPFYE*