Scaffold Ga0114336_1005330

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1005330
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11321
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000763	Metagenome / Metatranscriptome	901	Y
F045099	Metagenome / Metatranscriptome	153	N
F077012	Metagenome	117	Y
F085703	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_100533014	F000763	AGGTGG	MKNMKNPAVLAAGAFLAAWASSNFELDYRAVLWAVLSGVFGYATPKK*
Ga0114336_100533019	F085703	AGGCGG	MATIEIYGAPKVENYYCCYCGFDMTITHVCTDCNEYKSAVTLQEYFEMNGHYPRLRAVK*
Ga0114336_100533020	F077012	GGCGG	MNNTDKLLLICLIGLMFSMTLVAIDAYRLGKERGIREGWHRGRSVSRQEFWKE*
Ga0114336_10053307	F045099	AGG	MAQLKITFTDGKEITGEVTPLIEYLFEQHYKIGFHKAFREREEQSMVYWLAHEITKRSGESVDARLETFIGTLKSVEVNDSDPLV*