Scaffold Ga0114336_1005042

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1005042
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12255
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y
F045753	Metagenome / Metatranscriptome	152	Y
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_100504210	F021113	N/A	MDKREYQPDAVIVIIATSVFWMLVCLAFWNFNPKIETQVQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQLTAKTTYRTRRDTILVLDTIYKVDVIRLVNSCDSVIASDSLVIDNLQEQINIKDEKTNNLEETVGAYEQKTNLLSEQINTLDADKKKLEKQKKRRNHALVFSSSVAILSTFVLSILL*
Ga0114336_100504211	F019140	N/A	MKPAPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGTMMTKNKEDGAEQN*
Ga0114336_100504214	F012871	AGG	MYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVVFIGDVLTHYKPHRDKANLQIQREIAESKEEESKQLKEKEMAVNDDSWRRMLAEDLHNFKEGRYTVIEIRAVSLMRWLEESKQINADTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIRFEGMRELYKLYLSKQ*
Ga0114336_100504216	F091602	N/A	MKSELIFCPTCESAELDERVNAVLHDQKLKTYEEAYELIDDDGEIKKCFDCQEWDDADDDAKSEGWD*
Ga0114336_100504222	F045753	N/A	MYCPKITYCFSDDDIRTLNERIKAIANNYNDDQTGWFEVDEKQHLVFIDDLDNMYTINLRGRFWKNDDPEFDLDFVTLEKDGVTFSFDVNIFDDHI*
Ga0114336_10050426	F027518	N/A	VNTETEIALIHEQLQGMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQLILKMI*
Ga0114336_10050427	F039140	N/A	MKDWLKSLLSNCSKVSSKRVIAIFVVTNLILLSYIATFSEYDCPIAMYDTLALLTAGLFGGTVIEKFTKKTKNGKGTNDSENSSGGNL*