Scaffold Ga0114336_1003681

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1003681
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12673
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (84.21%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000714	Metagenome / Metatranscriptome	924	Y
F009685	Metagenome / Metatranscriptome	314	Y
F019324	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_100368123	F000714	N/A	VEDATIPYTDTKLTEEKMDTTTIESDAFHSPAVPYNPDLLVTYKVIKGYSDPEFTTSKVASLEWDLHNGRQSQKSVGVLQDKINVAKDIIAEAYVDSNDQDTLRSIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA*
Ga0114336_100368130	F019324	GAG	MLGYSESDLDEMIGAIQAALTTVNSDNDPWLHGNLWKAQEFLQGLWAEGYFDHD*
Ga0114336_100368134	F009685	AGGAGG	MSDQYIDEVLNKAQKLLWGGSETENIEAHNLIAKLINTDS*