Scaffold Ga0114336_1001215

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1001215
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25407
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (46.91%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F024290	Metagenome / Metatranscriptome	206	Y
F027828	Metagenome / Metatranscriptome	193	Y
F036765	Metagenome / Metatranscriptome	169	Y
F048940	Metagenome / Metatranscriptome	147	Y
F053990	Metagenome / Metatranscriptome	140	Y
F058096	Metagenome / Metatranscriptome	135	Y
F061794	Metagenome / Metatranscriptome	131	Y
F073458	Metagenome / Metatranscriptome	120	Y
F081258	Metagenome / Metatranscriptome	114	Y
F082582	Metagenome / Metatranscriptome	113	Y
F085684	Metagenome / Metatranscriptome	111	Y
F091925	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10012152	F036765	AGGAG	MTIRETELLKLFSKANQLDLSVEVREDKDGDYIVRIYEMFHPEGFDETVFINQQGETNWDKRCYSFDYMMDVLDGMLEEKRQEKIKEQKRQELIARLTDEEKDLLGVK*
Ga0114336_100121527	F085684	GAGG	MVRTTVYAYAEVERAYKILSELVQRENKLHEMDMTIMSQHLDEIQYEILPMLEEIVYFDPTP*
Ga0114336_100121531	F053990	N/A	MMYSSSQGGFKMIDTCILHDDYEDFAQKFLGVDYEDYVNLQLGLGDEDEIEVEHPVGV*
Ga0114336_100121532	F073458	N/A	MSAKLIALAAEIVDTNPAGSQLIVNLTNAETGADIIEALDNYDSTVLENHTQPVDSEDEGYVSFTDADGTVTYV*
Ga0114336_100121545	F013631	GGA	MITDVFHYTTSRWDWHDGNVNQMWIQEIEESHDCYKYIAVAYNPRKDSSMVMSEPRCYADTLQWVRKFCGSFSILPEFSILPV*
Ga0114336_100121546	F081258	N/A	MTITFPRLSAGIYEVQKDSNTVGFIRKATASKWIVTDVVDTPQHVTKTLKDAKDACINLIIFDVVDNTPADDYNDSVEVDEINHELNKKLEGSLHCYKQVPGTDKFKEVSPTEFGFAEPTLEPIEF*
Ga0114336_100121551	F061794	N/A	MPFTKKFPKSGETKHIRVPVVYADLVLELMELFERRFDVDKGKHLLKKYISNLS*
Ga0114336_100121554	F027828	N/A	MLIGFKSVKMTELTTETMIDTVLTIEEILTEKQLTALRDIMYFYKEFELELYEYPPEDTLFTKTQRELFDIFDIK*
Ga0114336_100121556	F091925	N/A	MTSISFTSGELLDIISALEEKENALYLAENYQLSAYYMNLGCQFQKVYDKLQEVAGEKRVAKLVLTAN*
Ga0114336_100121565	F082582	N/A	MTVDFSKDVMLGMLRKGQTGTQLLNILDVIVPDETPEMTREYVCDQLGIADCPENDDEIAAYLAAV*
Ga0114336_100121568	F058096	N/A	MNAQLTVDECKVMWVVGALERLATLGMIGPDIPLKLSSNAVEDYLEIDEHRQLLFDSDFEIATIFTALANDECDPEIQDPDDLKPIIDMLIEYKDNRTEIVRYALMQQIV*
Ga0114336_100121571	F048940	N/A	VIQVTAAQRMEKQFFLHFISLVNEVQGKQKLPSQIQVNRKSAWCKKVSNPKQKKDALARI
Ga0114336_10012159	F024290	GGAG	MTLEEILEEYGQEVLDTYYELFPDKDITKFGDRFCGPVGSFENFVLDCYHSTGSDELETLEDFTNGVFQEYYYYDEQTATGFVFYNEH*