Scaffold Ga0114336_1000638

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1000638
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29866
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (77.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004761	Metagenome / Metatranscriptome	424	Y
F032258	Metagenome / Metatranscriptome	180	Y
F048262	Metagenome	148	N
F048959	Metagenome / Metatranscriptome	147	N
F058086	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_100063818	F048959	AGG	VTNNHRKQEPTLEVTLTTSELRAVVKSLSIGVDQLAKKIQRLGDGRRADETHDEFVELLSAKQEMEDVLLEALQGDNS*
Ga0114336_100063825	F058086	N/A	VKESRWDFPAERRYNFSDDLKFGKKGEELTRDFLQSIADGSFEVKTDRYRNGRMVVETEQNPRGTGWKPSGLEVTESKWWVYIYCLDGAMIGVNVERLKRYIATLPKKRMKTFAWNSSNPARGFLLLPEEVMDMMINPEYDSAE*
Ga0114336_100063826	F048262	GAGG	MMAGSMEDTMESVIELQPLREAVASCIEQLDEQDRFIVDALNSEVISLQELGNRLGVSKPHAWRLRNAAYKRLQLLLLQNELIRERLGLDEDEADNGGL*
Ga0114336_100063835	F004761	AGG	MITLSQLRSQVRNMADLDETDLPDSVIDQFAKEGFQRIYSLERRWPYLQKSFTLTTTAGVRAYTIENIGDIREIISVVDTSTSGSRMTLISYDNAEEIWLGNTDVPSRPYFFSIWEDKIHFWPKPDNTYPITVRVYRNPSYDWLDSPEEEIDIDEWFHALLPYFVLARVYQRQEDAELSQMYMRSFEEGVGLARRDLMKASSAQPVIMSAGRKYPTMRRWLQTLGGTLGQ*
Ga0114336_100063836	F032258	N/A	MMKNSKPAHALYGEPITGYRLAPTATAKIAAPSAPYIGRNRCTANDDTCEGPKAKGTDFCVGHLRSQGAAK*