Scaffold Ga0114841_1038318

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1038318
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2411
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053078	Metagenome	141	N
F078653	Metagenome	116	N
F091586	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_10383182	F091586	GGAGG	VIQVRSVNGAHLKRILSVNFPRLYAIAIPQMARALGISKRTLYAYIQEERRVPEYVEERIINLYGEIPEEGWRTVEARGLHTITPTEDPNVPQAQALDLSVSADANWVEIAQASVMAVATKLHGHAMGEWIGHPEMLDVDGNPLDLVTECRRCGMLVAIDAGLREVNGFAWRAFCGSDNLWKGAR*
Ga0114841_10383183	F053078	AGG	MRLDSLLSWFRDHQDSLPLVIHRHNLMDDGGVPAWTGDFATYLDHAAHATFAETEERKVHDGTAAEQATLLKVTIQRYKYPMHSALHTLKRCRAKHGEPKPHEIGVALIATRGNLTASQEWLMRKYPLMLHREIWLEAAERTLRLLHERYTETPRAIVRGKSDSQLNAEVANAQASDQA*
Ga0114841_10383184	F078653	AGGTGG	MPKHPTKPDRYAALEAYVAACLPALNLANWKVTILNDIAPEDRYADIEPNDQAQTANLRVGNLFWAQKPEDQRLTVVHELIHLHLCRLDQAVDRLEPVLGSAAWTPWAGVYEDAYERATDAMAEILAPRLDLPSI*