Scaffold Ga0114841_1022383

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1022383
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4783
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035641	Metagenome	171	Y
F048800	Metagenome / Metatranscriptome	147	Y
F097170	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_10223833	F035641	GGA	MLESAEDIGVTLTFEVQDQYDTYHTIKVTGVNPPTLAQSDLLIKGVRSVSKPATKGRVRIYAYDTALEAKTLISVYQPNDVNPSFRRFKAPRTCECITLYASKRYFDLVDEQELVEFIPDAMIYAILALNSRDNRKAQEFLMNLDLAIKEQEKEMENEEIPTAAPIRFANYSRAENLIGSDLLSPSANDYFLYR*
Ga0114841_10223835	F048800	N/A	MDNQDSSPALTFPNVPIDFCPTGNWSEILQEFIDVVLVNGTINVPGLGDVTPEQIAQIEEDLADQQNQIDALEAEGTALDLRIDALEANPVVKVRYGTISSIPTGDSIQTVSFTGLPTATYGVSITPICGATISAQPTPLFSLSTGSKTTTGFSIRIENNIAEITSVDWMAVHTS*
Ga0114841_10223836	F097170	N/A	MPADGSVFDGFTSIVAQDADTHPSYLPPSMVAESVNRTFRGGINRTRPSIRNIPIVAGEGQDEIIVNDIQNGSFQGSFPYRATNLNTNDGILLSVSGVIYFLKVVNNIAYAYKIIEGNDPGMMHTFFVQAEDRVYIQNGYQNAIAWDGDLSVPAYRLNPYLKKMPIGTIMEYAFGRVFVTDRLNQIYASDIIYGNGFTDTKNTENFTEIGYWAEGGAFSTPSMMGNITGMKVMPQIGTNLRAQGALVILTANGAFAMDVSIPRAQWATTNMQTISLLGRGCTSPYTALANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVSNDTPWLKQFASTMFFDNYLISTVAPETYRAAGVEGLNRYHRGMVVLDLDQSSSPSPDAQLSFRWNGIWTGFRPTQLLSALIAGQKRGFGFSFDNDNKNRLYEFTNSTGSDFGANGTKAIESFFTSGRYDFAQSGASNKFLRKRITGGEMWLSEIKGEVTSKAEFRPDSYPCWSELKVPTTYGCNPCSPVLKTPCNPRRGGDSYKRYKFNSPDPSECNYISDIPVIEGSEFQLKINLTGTATVDRVRIMANIKNLEDSPIGDCPENDQECPDINCCPERYYDYSING*