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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008259 Open in IMG/M |
| Scaffold ID | Ga0114841_1018720 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6103 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011997 | Metagenome / Metatranscriptome | 284 | Y |
| F019088 | Metagenome | 231 | Y |
| F032164 | Metagenome / Metatranscriptome | 180 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114841_10187202 | F032164 | GAG | MPSSYYQAVAGVLESGAVFKLYYPNYSSFMSTNQPLPKAGVSRFNISTQSLDMVISTFQVQDRGVQQAPILGLWAANGAGSLPGDSSFGFNTGATNTGLTAVASGAGEMGTYTKSFNFGLTAGWPKTLNNSKYFVRNGEGIQNCTYIVGNVRLIPETIAEQFNGVLRAWNSQNDILGGLYPGIQSIAHYQTQFYAHVLSLNVTNEHDMYTVSGLNCSATPMSIAWEVTPTSTAPANIDQQATSNGNIWRTGQTGATPIMIACYTSRLEVSAGRQILTFT* |
| Ga0114841_10187205 | F019088 | N/A | MIQEIKLNGLDNKPIKTTKKPPPRSINENLPPCYFTSIFIGSKGSGKTYSLIKLLKNYEKYPIYDYEGHKLDMRVIVFCPTIMSSANPIYDTLKYLDEDDIIMDYTDSKLLDKLDEIEKEKEDINNYNKYIQVWKKYMKIDENINLLLPDELLILSKFDFRDPQEIPHPPYKYPRINFLIFDDLVGDAQAFKKSHSAINNLTIKHRHLQCNLLFTTQYIKAIPPVLRRNLDIFVIFKFANVQSVVEQIYPEISGVIKEEDFINVFEYATINKHDALIIDQTSKHIFKLNWDTALILD* |
| Ga0114841_10187206 | F011997 | N/A | MSEKTIYDVERAKFEGFGTYKLPIEERVNEIMEATKKEYPTVDNYLLWLCAVDYVLEEKGLKKDNEDGVKMYEEYVKQRKIFIYNTVRVEEDDKIKFKYDYNVLQEV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |