Scaffold Ga0114841_1012661

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1012661
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4496
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012971	Metagenome	275	Y
F016804	Metagenome	244	Y
F041091	Metagenome	160	N
F041736	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_101266114	F041091	AGG	VSGFTKERQKTMQPSVKSEESMSEYKTQQQVYDELRNDILEQVAVEIEKMQGFGKDTLSSFGIFIRGMKK*
Ga0114841_10126612	F012971	AGGAG	MMDFEREKWMALQDLSPSDVADAICDSQAIVEAIQSNAWADVADMVRSRVELKAERLAQVANDLPLTPWVDTEQELNLWRYYRMELQREAIEQNKPKLPKINPYTSEASNEN*
Ga0114841_10126617	F041736	GGAG	MILKSQSMRFVMATMMDVEHEWQTSKWKSKDDMINPDVPMIVQIGDYGYEVQSCGGDSDIEGFVIMCKDEPVCKWEGMECIKLEKNT*
Ga0114841_10126619	F016804	AGGAG	MSKLKTATIPDHHKVQAKATLNEAIDEAPDTVIVLCFWKDRGQFKIKTSTTTDRLVIIGALEEAKLKFQMDGYV*