NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114841_1003065

Scaffold Ga0114841_1003065


Overview

Basic Information
Taxon OID3300008259 Open in IMG/M
Scaffold IDGa0114841_1003065 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9111
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F006467Metagenome / Metatranscriptome372Y
F046346Metagenome151N
F071968Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0114841_100306514F046346AGGAGVKMRIKSQLYSDAEAQRKVGAVLDDCGPSSAAAAVAYVNGYNPDLQASDGVAAKARATGFTEKQGVSDNGSSLPELMKTVRELGGKARPADTFAEAVEAAKAGAALIVWVQAPIGYPKQALSKWHRNWASYWQKKDPKVIAAGYGHMTSASYDADAQTLQFADPTFDEKIPKEQFAVAITEADLKAIASGKPGSPASHIVIVTKK*
Ga0114841_100306515F004668GGAGGMARSEDHIDDIHEQGWTRVDTAPSEWVALVPNEDNSAFGGTLWKRGEDGNDYSEGCTAGHPVSAALGFESAARAIAVLIKEESAK*
Ga0114841_100306516F006467AGGMFKNIILDLIGGAWTILGLLFAVVVLPEGQTQSTMAALFILLTIVWIATGPLRWRD*
Ga0114841_10030653F071968AGGAGGMAWIKKDTGTLKDPKIVQLLGEAKGAEAYVLWDAALFEAYHQTPKGRFQNEAHFRACVGGVADVRHLKRLVALGLLTRADDGSIAVTNWGKHQADPTAAARKERYRNAHGTESERNQNAPEKSRVEQNRKESHSNNQLMSVGEIIRRGGSR*
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Institute for Fundamental Biomedical Research
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