Scaffold Ga0114841_1002939

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1002939
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9853
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.52%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F068425	Metagenome	124	Y
F071219	Metagenome	122	N
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_100293910	F049410	GGA	MTRGTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKHDLIMPLVEWNLKGKFEWEIIN*
Ga0114841_100293913	F041191	AGGA	MAKKMKLLWKPTKLTCEFIISDFAKSEGVQKVIGFSRGWHHWNSIRLGIRKEEDYCVLYFYAYIKGQRIIQRLGRYSIDELVKVRLHWGHYIECKANNGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPIDIEIINLKIN*
Ga0114841_100293914	F062749	N/A	MKTKASLILWAVSALFMSFWAVKFAMTGVFFGNSELLTFSISFCASLTSAVCGAGFMQQWLKK*
Ga0114841_100293915	F102493	N/A	METTLTLHWEYEETDRENNITGGWVLTDITNGNTPVYLSPKLEQLLNEELDPENF*
Ga0114841_100293917	F044325	N/A	MKALIQKLLFGYRPNPNAIEPKRGSILKYKGHNAEAIHSALVLLKFNLENAKN*
Ga0114841_10029394	F071219	N/A	MIHSQHPDNSILVIITSVIIQAGVWTSDWFGNMNLVGIYDTIYDGAKLGALLVSMWASYRVAKKNKND*
Ga0114841_10029397	F068425	N/A	MGAKTNNMKPHHQLITFAVLCLLLIIGLNHCAKEKPKVIPFDYKAEAEMMKKQFGIEQAILLNQLEAATRRLQVANNAKDSIRKREISLSNTNIALMKKLRNTLPKECDTVFVLCDEIINVKDSSYAALFNAFQLCADGSSIKDSLITTYKAENVTDSTLLVISKQETKQQRKGKVAAWCVAGAMFLVWLVVGLK*