Scaffold Ga0114841

Basic Information
Taxon OID	3300008259 Open in IMG/M
Scaffold ID	Ga0114841_1001799 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18430
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (21.74%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18430

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (21.74%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002621	Metagenome / Metatranscriptome	542	Y
F004206	Metagenome / Metatranscriptome	448	Y
F051085	Metagenome	144	N
F078423	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_100179911	F051085	N/A	MNYGYQQPGGMMQGYAPQPPMMPGSGYGAPMMTNFQNTTADVEAQRKRLKALGLDDTMIDDALSFKQGLFEKRDEMQGKALEAIGGGIKAAGSNLTGAASAASAGLKGLASSL*
Ga0114841_10017993	F002621	N/A	MCNMAKLPRLSRTISLIALLTCLGCQVTKVALVPSGDPVMLAKPVKASVYSFDKNKKLVGPATVVIPAGWYALPKSK*
Ga0114841_10017996	F078423	N/A	VQPKWGGRWSSGSRIVTLTSGSSVGVPVSGTQIPANSQVVCDVNANTQIFSNGTLCTLDDNTNAIFSTAAFSFAPSPANKTVQFYNSTAPFEDILGVLQYRDPDTGANALLVAVNEERSSDGGQGKVWCIRPNQSPVEVPMNGHDIYLPVRLIQATNGVVMLRPGNARYYFTEADVNTGNNTVTLNVVPDLATGDIVNVGQIGNAAPLWNASPGSGQGFQLYVNVVNQVVSLHLTLADARAKTNSLPLNPDNNARYYIELASNTTGYDLAQDIVNNLNDGMPILMQSTATNPSALDAGFNRIPSTLSINSSDATADTIAVFNHNFIPGDQVTLTNIENGGANVTNKIYYVYPVDNNTLRLFSGTTEETDSLNDANRSPMESSARWLSSTAEHIQTRPPPRWLCLRPWWTLPLPTSPAVSSARALPVPRCPRVARACTSRTACCCSTATITWPSPTCWTRCTTRLS*
Ga0114841_10017999	F004206	N/A	MIPAITDYLLRKLPDSFKNWTREAVEDYVMFHAEQGTLKIATQDDHVVGVLVGWRQMGPEPKAWTWQASDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPEAAILPAIGYRNGKLTTYKKGSMPIYRAADKKYGNIS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114841_1001799

Overview

Ecosystem & Geography

Associated Families

Sequences