Scaffold Ga0114841_1001274

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1001274
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23539
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (18.60%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008081	Metagenome / Metatranscriptome	339	Y
F020344	Metagenome / Metatranscriptome	224	N
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_100127412	F093880	N/A	MEAKQIKEMNDLNRDIWGMIVQAQKTKNWALLEINLKRLYSLQKKYINLINLMDYEVKGTTLMLQDEIRIRSQFEKQWFIDVAERNGNYHKMKENIDKYFKDEEAL*
Ga0114841_100127421	F008081	N/A	MEQLKVLNPFGYGEAHKVLDENRKPPEWWWEYLGLHDLFVENEFYLLFSDGLLVKKGRSKFRTSQYIKGEKFYSFKKFYEGIFFEGL*
Ga0114841_100127423	F036704	N/A	MWIEIEVILTGTTFDWKELGLEVKHECTRRMVRIKDIAYVQELMHDIQIVYFYDQTSCLIKGKYQQIRDEILHLDDPEYD*
Ga0114841_100127424	F001775	N/A	MIESEKTKIAAVSFLIGAVVAIILFPRPEIETVYKTKIDRLTDTLYITSKDTIYIPKTKIKTEILRDTILIDSKPKIKAFETTFPFEYGSTKVSGEVLGEVLKMTAVNDYKLPVVTNTITETKTETIVVKPKGIYLGANVNSLLQPGAKVAYLDNKYLFEYSYQPMQKVHQIGVSKKLF*
Ga0114841_100127431	F029443	N/A	MTLVELVAKLREIQEDHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVVRPSTYRGTMIQYNLVLLFADLLTEDKSNRLQIQSDQMLVALDVLGKLKLDTAYSFNPSTNATLEFFQERFDDFTAGVSIDIQIMSPLPLNLCAIPTT*
Ga0114841_100127434	F020344	N/A	MVIIEQGQASTIYIALFDKRLTSSNSYTFLFQHEVTKEEVTLTLSDVSPHKERYSEFNILQASFQNSTVGFWRYYVTQAGSGANIIATGKMELTATNLSTTDVVRYNGYNGNYKTYTV*
Ga0114841_10012746	F005529	N/A	MPRTLPTSKPDYSLEMRFKNSSGEWSQWINKGKGLFQSIELVQHQIRLITAPHRGKEIEVRFEWNGWLCDYAGHPTGEVIRFK*