Scaffold Ga0114841_1000764

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1000764
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31847
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041651	Metagenome	159	Y
F066718	Metagenome	126	Y
F072113	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_100076413	F066718	N/A	VDDYMIDKSPNEQAAINDAAAAGGYFIEAIGVYNFLDFTPTQYDELIEAIITAYVDSLQAQKAESEGVRFP*
Ga0114841_100076431	F072113	AGGAG	MTSVHQKKELGRWLLPGAEGVQQFGVTRKPHAFHRAMMRLCFGWQWMDKELTCDYCNLYPRLRRKTHCAECARSLEGGELYNVIKLAEKAGIVFGTSSTHITVQKLEKFFALVQGVNKP*
Ga0114841_100076433	F041651	AGGAG	MQIDRESPPGAWQREWDARSHTETEYRQEIREMRERIWYYLKQIAELEQEVKELRAKDARWVQEP*