Scaffold Ga0114841_1000194

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1000194
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40001
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (23.21%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F028725	Metagenome	190	Y
F030677	Metagenome	184	Y
F061575	Metagenome	131	Y
F080936	Metagenome	114	Y
F094990	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_100019417	F094990	N/A	MNSIAKITIPIEKLYQTINSAEVLSAQQTIHNASAITNSAEYSAAASAIAQVNQAVKAIENARKTVTTPLDSYKKELMRIESDATAPLVQFIADTKAAMLRYSEEAERKLIAEQAQAPTLQDLVDVTIKQEHIKGIRTIRRAQINGEVDWLKVLSVLFGSGLYRPEDFTRNLLKAMEICKVDSIAGIEIFEEKIQTITR*
Ga0114841_100019420	F080936	N/A	MQQSNITVLTLTILCCILMLMLIKTCGSLATIEGELAYADSLNSEFTSRIKDDSSTIHSQAVQLVSAGTKLKALELREPEVLVRYKTKTVIKTEVELGETVYIDSFPHLRLPRTFHRPGKWLEIGGQISRAGRLQIDSIIIPVSYTVAIGDTLRKGFLWRKRDKVVRLGIDNPYVHVTGMNNVIVADRPKKWYETQLAGAVFGGLIGFGLGSAQN*
Ga0114841_100019428	F030677	N/A	MPTPAQIQKNLDELYNDWTSKFTALYGPVRELKRIMFKRIFGTGSSRGSNSAGEKLPTKPYSTTPIYVSPRSLTNAPAKFKFGKPPEGESKGKPIKSLYFPDGYAQLKRETSRKLPLELTGKLKGGFLSEDVITEGLEASIAVPASEEGKVEGLEKKYGPIFVPTAEEQAEMLEDHAQQLVEQIINAMNKR*
Ga0114841_100019429	F024730	N/A	MCIESLLGLRDCAGAEPSTGLYIDDLGINQTFLGQLITDQYHNGVELFEDKRAFAWRKISSDVLTKLSPMMKSDTIIESKRVGQVVSNYSNVQTALGAGNYGGIRLKIDPNTVAYLNFYLADINLAIAATNTNVPVLIFDMTTGKLIETITYAEGALDQFIGKTFTSAKRKLDIAIVYESTMNTAKFTPKKGVCTSCGGGPKEAHMCPFVDAIGIELTTDGTNVLTSTSSKYTTGMSITYNVNCDRQGWLCSVGGTMALSLAYATAVEIYNYALTISPNQRVNTAVVVNRGQNKTELMEGIMAARDIAATRYGEELGAILQNMRLPDDNHCWDCKRNMKYVTALP*
Ga0114841_100019434	F008936	AGGA	MASFEQLVKKKIALFESVPKELETAAIKTQAEVWRKIRPILDEMDTDAAGNIEQTEGNIRRIGVIAEELKKVLAGAEYKEAVRAFLGSIDEGVQLTNEIAQTFEEGFEPEQVQRQLLQISKQNAINAFYGSGLDARFTQPFLEQLTANVAARAPLREAVNALEGLVTGTDKLDGKILANIKTTATTAQAVADRSYSAAVNETLDIQWYEYLGGEIPTTRPFCEHREGKIFHKKEIEAWGDGQNSAGIRDIQDGTWAGRIDGTDSKSIFTFVGGWNCRHYLVPVPDRKVPDTVKARARAEGYID*
Ga0114841_100019439	F005050	N/A	MACVSYCDSSLLDHNLVNCNEYKLGGVSAILVGACGTELVDPSDSVEVDALITAGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLFDANVTDENNTFWNDVNNRRIAWVLAYMCDSGKVIYINPPVGITTSANFILPEQNNELQRYEVTFSWRDKNIPAQYDAPAGIFG*
Ga0114841_100019444	F028725	GAGG	MVELFKHEGHTYYRFPKELNLPLERFSMSMALMERISSGLSGAEMERILAGMEKALSAGLSNPKNAAVVAGYIHVIRERQDTVIHRDLLLNLAATWVVRGDEDPAVVDPTIHQQKLELFEGMCKEASHDFFTRLDIAPLMPLLTMSPKDFQILWEYNVEEQRKLTQALKHLTTHLDTGRKK*
Ga0114841_100019446	F061575	N/A	MSVCTPCFDSGISVAACHAGISFGLVTPETEYTVTITHNATKRVQTFTATSDIDGIITIQGAKVDALQGYTIGLNCDQFSICDVLYDCISFSVVNMDVDEPQTINLLECLEC*