NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114840_1027913

Scaffold Ga0114840_1027913


Overview

Basic Information
Taxon OID3300008258 Open in IMG/M
Scaffold IDGa0114840_1027913 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)928
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.8271Long. (o)-83.1945Alt. (m)Depth (m)7.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032536Metagenome / Metatranscriptome179Y
F062447Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0114840_10279131F062447N/ARIMKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGAKSFSLQDIKEVLDSVRETLNKL*
Ga0114840_10279132F032536N/AMSQKQTFEELMRSFRFHKNPILNWFLGELSYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYVLDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKE

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