Scaffold Ga0114840_1007330

Overview

Basic Information

• Taxon OID: 3300008258
• Scaffold ID: Ga0114840_1007330
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3787
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009073	Metagenome / Metatranscriptome	323	Y
F017827	Metagenome / Metatranscriptome	238	Y
F021984	Metagenome / Metatranscriptome	216	Y
F030087	Metagenome	186	N
F090374	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114840_10073301	F017827	N/A	MSYASMNYEKFGMYKNTPANKERVIKAGTPVVTYTTMFGKTYNLPYRTKKQYAEIVQFIKLFRNEDITLKRILSDYSVKMGRYVNESKLRKEIKAEFGFTKSAIDLILSIH*
Ga0114840_100733012	F090374	N/A	MSSTHIVAEAYNDIDKIHSIERERENTMADPKYIQWVKELKVSQLYTSRELIHNANRLMKQYTHKIGLEG*
Ga0114840_10073302	F009073	N/A	MKNYQIILTSILSFAVAYFILNGTAAEYVPFAGPENELGCAVIALTMGVLSTYAIDWKSFIQFLNK*
Ga0114840_10073303	F030087	GAG	MSSETRREVLDIIMEIGYGENTFMLTNSMYGLFDGYLYDELIQYADEVTMSKELYRRILKVFNTVCKYPKYARYDEPTESYNEPEPIEYVEGMGVADGKLYLATN*
Ga0114840_10073306	F021984	N/A	MNTIPRGYTITPKVKYLRTKDGKKRTQLVELTHKRKGIKKLFGNEEYALKYITKLETEKVTSNALAGKGAPTLGKSAILSAGKDLIASKELAGEFDEPLNENE*