Scaffold Ga0114840_1004437

Overview

Basic Information

• Taxon OID: 3300008258
• Scaffold ID: Ga0114840_1004437
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2475
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F049419	Metagenome / Metatranscriptome	146	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114840_10044372	F032548	N/A	MKNKQNKDMEKAIKILEELVIQADEDCPQDCRTMHFVNALEEASEFIMEYKNTK*
Ga0114840_10044373	F036564	GGAG	MKLGRICVDLNYIVDIDNDEMVRHATEALYEDLMQGIKYGDLTNWIRVSEDKNATEDMIPEFLLDKEND*
Ga0114840_10044374	F064403	GGA	MINVRSKILSDLKRSYLKEHPVTLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF*
Ga0114840_10044375	F044916	N/A	MGNKKVDKSRIEKGLEKEEKTFALMAKKIVDAIKNEEELRAFAKTSLEILYKDNPNLFADHAKLKLNKK*
Ga0114840_10044379	F049419	N/A	MKLPKLNLLDLATTYIFFGLIYGTIITLTWNYLFESITFVHLSILQGFGMHLIARILFGNTSTNYISNFYSPKTPDLDKIDSYLKEIQEDLDKEADEVEK*