Scaffold Ga0114840_1004400

Overview

Basic Information

• Taxon OID: 3300008258
• Scaffold ID: Ga0114840_1004400
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3203
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004816	Metagenome / Metatranscriptome	422	Y
F067410	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114840_10044001	F067410	N/A	QHFNIHQDTLSGMYPGINSLGAFREHSYASIVSLNIPGESEMYTVSGLDTEQTPATVEWKVVSEAYTDTDITPASNCTPYLIAAYNSHLEIKAGRQISLIP*
Ga0114840_10044006	F004816	N/A	MKFIKYKQVARITLYGFDDLNRNNNSSVFTEPLNSVYYTQNINAGVQVGNNAKRMRFQIQGLDNVKLSEHARFCIESINVPILYDNIDDRKSLGQTIVRMSNLSSINCFDTHGKGNTDPVIFTAQTHPYQQRLGTVTNNVIYANTESSPVFYNPYPEILYNFPISSNFLNNRYFDFTFIMQFMPGDSITLADDQIYFDSFHISFIVYDLDE