Scaffold Ga0114840_1002035

Overview

Basic Information

• Taxon OID: 3300008258
• Scaffold ID: Ga0114840_1002035
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3733
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039986	Metagenome	162	Y
F047515	Metagenome / Metatranscriptome	149	Y
F086804	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114840_10020351	F047515	GAG	MNYQELVSLVGGSNPQAASYQDIVSGIQSQYRPQTQFAPTTSLLDMIGNQLPEQPRIAYGSLLQAQPRVLPTPMTPVKNVDAAASLDSGQINLGNLDTGKITGNTAIDNTLVYNNDFTKNIGGTTGSTGSTGLGNNAAAVGAVTAGLGVLAGNSDLAKTGALVNIGGQLLNASSAEDVFKTL
Ga0114840_10020352	F039986	N/A	VTYDLSTMTTKLDSTLPNISKNVSGNVVQFINPVTQQPIVTSFENGKLVVKEGVNTLTGEQAQAAINLALGTGALTGTEYKNLTGALASAKSMDDVYAAFGTPQAVAALDPNYGFQLGVGKTLQQAQANSTGVQALVDKIAAENGGRLPANFSVANLAKTANVPFQFGQQVYDKAYTTDAGQRINTLAKAPTSPFNFNPANVYQAPIVAGQMRELFPAFGESKRLAQGLINQRPTTQSIVNMIQGLPADNTLGLNTMQNNVVGAPTSLNNVLGLIAK*
Ga0114840_10020353	F086804	AGG	MATAPVYWSDKLVKEYIDKEFAGKTGTELWNAVADEAVKQGVPAEQIGRVLGFDTAAVNKYATDIGKPLVSEAKALDTAIDFAYNNQFGRDATEAEKANAKTYLTTGGNSVAGTGALNYSTEGYNYDTQSIISGYRSALGRNPTQTEYVSEMAKLGYDPFNASVLGTAKNLSANVAALESDPFAGRYANVNP*