Scaffold Ga0114840_1000436

Overview

Basic Information

• Taxon OID: 3300008258
• Scaffold ID: Ga0114840_1000436
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9819
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027776	Metagenome	193	Y
F051705	Metagenome	143	N
F056414	Metagenome	137	Y
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114840_100043610	F056414	AGGAG	MKLTNYQRSQLKAAACFGCSQIDKVAASLQRENPDAFWRESELHQRSFYHEPMSYGSPVPHRSYVQRLVVRRRELDNEQRLIMAQNHYLEQTYQIGVGA*
Ga0114840_10004366	F051705	GAGG	MQITATFQDEQEAIKAIHSERAWQTLYEINHVLRSNRKHGLPFEQTVSQIQASVNDALALIPD*
Ga0114840_10004368	F079788	AGGAG	MDNDDEIESWASIVLGLMATVFFFIGVVAVIVSVCMAFGYYTHQPICGSIAALFTQECK*
Ga0114840_10004369	F027776	N/A	MVVRMMNPLQVEIAKTVFAHLPAVGNIGLISREELATMLHTACTDAALAGWARGTETTQRRLDQEMEILREELKATQTELAYAKAN*