Basic Information | |
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Taxon OID | 3300008255 Open in IMG/M |
Scaffold ID | Ga0100403_1163890 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 808 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured archaeal virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Utah | |||||||
Coordinates | Lat. (o) | 38.9383 | Long. (o) | -110.1342 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F014357 | Metagenome / Metatranscriptome | 263 | Y |
F019951 | Metagenome / Metatranscriptome | 226 | N |
Protein ID | Family | RBS | Sequence |
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Ga0100403_11638901 | F019951 | N/A | MTILFKEFRIDVSANNVKCEANNKLYVQKGQKIKLHAIQIAPGIDIAHEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDADAVEGQTFVTKAWGPNTRTILGVYM |
Ga0100403_11638902 | F014357 | N/A | VNTSTDTQITKKNNPSEFCDFPFRGGVAAKRKIDLYGILYSSRGADDGDLTHYIHTEYLKLMKGRNVLFDSMRKGLPAHGKNVPVNGAFRAENGYDVGGEYSDIYQKDALIFDQPIRFMNGEELDTYWTTLVLTSAPGTFLARELEIAYILKETQE* |
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