Scaffold Ga0100403_1000307

Overview

Basic Information

• Taxon OID: 3300008255
• Scaffold ID: Ga0100403_1000307
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45904
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (10.61%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022145	Metagenome	215	Y
F034486	Metagenome / Metatranscriptome	174	Y
F044785	Metagenome	154	Y
F044910	Metagenome	153	Y
F054439	Metagenome	140	Y
F085177	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100403_100030718	F044910	N/A	MQNDAHSKKIAAPVTAPIGSTTVIAAQTDAYIYIHELIGDLASAGNLIVKCGTRTVASFTLDAGQGITVQDEPGMDGVPRFECRPGEAFILEVTGGTFNGAIDYSFRY*
Ga0100403_100030719	F085177	N/A	MLGTINDYAVIVNNVLKHVAPKVSPTVKPEYLDFMYKVDNNERIYTDVGVTGLGMAEIIPDGGIGASDAPIQGYSKNYVQMHFTKKVRLTFQTNFFLFESAAAKIKGSVKSKVIEGKNAIEHAKNYLAQSLLAQGFNTSFTWTPINAVGTSTPVATIGADSVEYWSQAHPREDGGAAWSNVIVDGATNSPQFTYSSLLAARRLHSEKKDGRGNPLVSDLDTLVVRRGSTAAQFAKTIKGTIDKGLAPQQTNVFNNAPATDTFKIVELSPYQNLAMDGLMWGMFDSKMMTQDFGFLYIEALPTRAEPAVIDLLGNQDLVLNFNSLAVMGASDLRGWMWSDGDGATV*
Ga0100403_100030724	F022145	GAG	MPTPKEIKKENYTVQVNYSEDSIKNKLLKFISKSGDEFEIGAEELASMLVGGVNSDTLEAAFVESDRINVVEVGRQLACVLDKDMKKGEKININYTHPYPIEFALIEQVYGIAKINMDVPVLVLTNDYIKDMRSKIRPEQEKFLQKFYSSFKNLKLNKK*
Ga0100403_100030725	F034486	N/A	MENEQSLKQRKIALAQSEHASTIIELMKDCMSQVPLVDDKSQWKTIVNTITLDTQGTMLRTMVDLLDAIRKGSLHEPKE*
Ga0100403_100030730	F054439	N/A	MYCGKRASSMKQMAYAKRVFGAQGTTKKEIALDVGYSANVANSISSHIENKPGFNYAMTQLAVDSNNLALAAMSEFKARGFSDFSNKDLIGALNAIGSAWSRFNQTKEKPNDHPSGNKLRTVILQNIENQTLNTQSTPIKKPPVVEVPVEMVEEGEQLDF*
Ga0100403_100030758	F044785	N/A	MKREAKWNTVLEQYLREKKFYCYYELKQTDTESFAFAKIRKVQWDGLQATEKNGLVWKLSDEESRPKPIDGLSTPPLPSYLVIKFKDKFCLIRFEKIVKLRNEGVISVSRSTAEEMSEKIIILKLK*