Scaffold Ga0100403_1000020

Overview

Basic Information

• Taxon OID: 3300008255
• Scaffold ID: Ga0100403_1000020
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151938
• Total Scaffold Genes: 228
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 136 (59.65%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031713	Metagenome	182	Y
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F042051	Metagenome / Metatranscriptome	159	Y
F042607	Metagenome	158	Y
F071164	Metagenome	122	Y
F094469	Metagenome	106	Y
F096147	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100403_1000020145	F031713	GAGG	MSNKNLTIDLKSRKDVDGQTFYVGKLKCPVMIDCSEGAVFLVFVSDKGEEQLQIAPMDKKEDD*
Ga0100403_1000020184	F096147	N/A	MDVENLKKEFVPKYIVNGEQKFYRFLIFYAVNKLMAIKSGKYKGISPELEFMEYYDCFIILYRREGDLTYINLAKLFRKAAHKIYRVMLKEDMTPRNAKFLNLV*
Ga0100403_1000020196	F042607	AGGA	MPLIAIDNKRVDLTYDEIQLFNKIVASYTSLTNKGEDLFIDLFETDENGIIIFLKPPSKRKTSFEVFLFLMAVMQQQHIRLMYKQLEELSAEVREKIKDK*
Ga0100403_1000020197	F036462	GAGG	MDKVSLKDFLGDQMEEDFLQFDLTDIQEVLQSLAEETAHDLAHAELLQQKSLRGADILSEYLCKIVKTVSYLETKINSTKNKVSLEYMAPEGLRTTSEMKKWAGESSPIVEELQIRLAKAKASKVVLEKKYDILIKSHHHFKDISAGMRKTILGYNNTTDKEKVPEGYE*
Ga0100403_1000020201	F042051	AGGAG	MTNTFGEVSWNDDVYAGSEKKNSKDLFLRLDEGSNEMRLVTQPFQYLVHKYKKEGDPGYGQKVSCSAVHGSCPLCAIGDKAKPRWLLGVISRKTGTYKILDISFAVFSQIRKYARNTARWGDPTKYDIDVVVDKNGGATGYYAVQPIPKEPLSAADQQIKDSVDFEDLKRRVTPFTPEMVQKRIDKINGVTGDAVEATPETKSAKAKTAPKSSPAPVSMSDEEDESFPAYDGEQAAS*
Ga0100403_1000020208	F038776	N/A	MGDVMSKFAINYSSLENTIYKKAYRLEDVKDSIERVAFDVVRFKDDDNGANLWQIQSSDDGDYIVSIYEPDQEEKIASSNWKVSINKISGDLQISYKGDPLVKVAYNKLGIPRAELNKAEQYLPQKLADNKKLVNALLNELNESAKKEVLSKYPELV*
Ga0100403_1000020211	F071164	AGGA	MRISEMLTAIASWLESPDNEAILLAEYDDDCLQIVASSCVQAAALLKITAETVEDIEPPEESKITPEAIDDLANLATAFDESGDPELKKQASVIDELLLTIASPPEAVVQRKDLIDQRIEELKKKYEQPAKDLAESNKIADSEKLIEKSNMTKQMDIHESPLSSRYCPDHAGAQIARVGEHMWQCELDKKIYNFETGFTLNSGVKVPGGDVANQTQMTNIPFYAIFDTRQDRMGY*
Ga0100403_1000020212	F094469	N/A	MNKNALKKILEHPDKDEIISKLVIGISSKDIHDWLKAKYTNVSEAKFVIAEKSIKSFQSNYLDIYNMINDDLVKSKSALATSTEEQLALSVQNNPTYKSKMLELAGKELDIRQIITNLCVAIESRLAQVFDEIQEDPRNINTRVDRLLIDYAEVLGNILEKYYKFTEVPVNQTVEHKVTLQVVDQHISVFHDVIRKVLSQMDLETSLYFMEVFNEEFSKLKLPVEKDGPNTEVRLAEAKLLSETINKKINE*