Scaffold Ga0105351_1241782

Overview

Basic Information

• Taxon OID: 3300008254
• Scaffold ID: Ga0105351_1241782
• Source Dataset Name: Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN4B Hudson Canyon
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 577
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location

• Location Name: Hudson Canyon
• Coordinates
  • Lat. (^o): 39.54
  • Long. (^o): -72.41

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002715	Metagenome / Metatranscriptome	535	Y
F030553	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105351_12417821	F002715	AGG	MPEEELQSVKLEVGLLKNEVEVRGRQIDTLLSKLDLTTDKLQELTVEIRTLNTRQEDYLRHTSSMRDEFKILHTRIGDLHDKQLASQKEIEIRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISIFLKE*
Ga0105351_12417822	F030553	AGGAG	MKTFKQFDETKLDDKLDKLVSNEIKKRKLAKFPVNATDDIKMRMKPN