Scaffold Ga0105349_10041323

Overview

Basic Information

• Taxon OID: 3300008253
• Scaffold ID: Ga0105349_10041323
• Source Dataset Name: Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1945
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location

• Location Name: Hudson Canyon
• Coordinates
  • Lat. (^o): 39.55
  • Long. (^o): -72.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037425	Metagenome / Metatranscriptome	168	Y
F039346	Metagenome / Metatranscriptome	164	Y
F044731	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105349_100413232	F037425	GGA	MAWDDFRKQYQGIIKNLLNNVDICNERYIKSGDEGYMVQRKVYVKEIEEIKTMIKKKERELGYY*
Ga0105349_100413233	F044731	GAG	MTLEEIYRKYEKLTLEICTGEATHDNTLECAGAMMGQAMKLYKLVLSPEDFDALMHIISQASGLDGETLNKDDFPSGTLH*
Ga0105349_100413235	F039346	AGGA	MYSSFVITLIECLEIAFITLLISQTKVHKPTVVTYGSLGLLGGLLSAYYLHDMLENYEWLMYAILSSLFFYLFVKNKDIQKHIKEHVESITGASSIVLFLTAFFIYGRESFEIFSNLFLNPEASWSAAICAAIVAIWLYMFARDSKYTSYVFKFGYWAYLGFALWFGYEALEHLHIL*