NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105357_10337348

Scaffold Ga0105357_10337348


Overview

Basic Information
Taxon OID3300008252 Open in IMG/M
Scaffold IDGa0105357_10337348 Open in IMG/M
Source Dataset NameMethane-oxidizing microbial communities from mesocosms in the Gulf of Mexico - GOM15B Gulf of Mexico
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)615
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)27.37Long. (o)-90.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016878Metagenome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0105357_103373481F016878GAGMKSFKGYLKERFQEWKKAGAPAWTESLSTMLFDLPRSGLKDLKLPLSPSIMKRIWPKSVRSKAFHLTDFDGLKKLKGMQKGKRSISAFYNMDDYMITSGIKTEGGYVVELEGDVLAAAPDDISSQPDKTGRRWLTFSTIMNSSTASDPGLGGASKLKRMEKDLEKLLIDIIVKYDDDPSDSS

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