NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105348_1199034

Scaffold Ga0105348_1199034


Overview

Basic Information
Taxon OID3300008223 Open in IMG/M
Scaffold IDGa0105348_1199034 Open in IMG/M
Source Dataset NameMethane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8C Hudson Canyon
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location
Location NameHudson Canyon
CoordinatesLat. (o)39.29Long. (o)-72.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013815Metagenome / Metatranscriptome268Y
F072442Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0105348_11990342F072442AGGAMKTFKEFFQLGVTKPSKFDVQNYLNSLGTRLMQLPDIIRNIEKHFKNIKKIKLDRSGRKVLSFEEHIPEEITKRDIKKNK*
Ga0105348_11990343F013815GGAGMYFVQYEKTLPPWYSGTDKIQAETSEDAVKEFYKRHDSFEERIRSVSKVQDTYQK*

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