Scaffold Ga0114916_1035143

Overview

Basic Information

• Taxon OID: 3300008221
• Scaffold ID: Ga0114916_1035143
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1518
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032043	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114916_10351432	F032043	AGGA	MYYSTKNQKDFRCMGNGHYEKENNTADRFGSKDLRGNNGMQKEKIDNLAQPEDMMYNMFMMPRR*