Scaffold Ga0114916_1028937

Overview

Basic Information

• Taxon OID: 3300008221
• Scaffold ID: Ga0114916_1028937
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1747
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002629	Metagenome / Metatranscriptome	542	Y
F073270	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114916_10289371	F073270	N/A	MKTIKNKVYTKKDFNNVIIPSWQRWRNENNVKDLAEAVSTQGQMRDVLISVTKDGTKILTDGAHLKSAMLDVLNLKKISVKEIYVKDQEDARKSFISFNTRGKVLKQIDYVVSYAGSNHKVYKKFLRDVLQSPKNLKEASDVHSKLFTIPALIKIFLGEAKNIKNGSANLTKEFNRTLNLVEYLGENYLKNGKLIKHLEKNGKAMKLNGGSIIPVMSKIKSNNILEKTNKEILDMLIDFTTYHFNSTQSCSFTKDAVEQTFSTYVKELV*
Ga0114916_10289373	F002629	N/A	MEVNKAAWEKLKKQIEFHTEQDSEITDVQINYQVKEKKNRNYLKLNITIDKW