Scaffold Ga0114916_1021289

Overview

Basic Information

• Taxon OID: 3300008221
• Scaffold ID: Ga0114916_1021289
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2193
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038862	Metagenome	165	N
F059448	Metagenome	134	N
F066148	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114916_10212893	F038862	GGAG	MSDKAWHISYLSAIVGPCAATTDDGCMAWEDEEKSGFVMRLLDRDNDGKNLLLVIQPEMNELAMYTLTGYCVANELPYMIKDWEALSAEGQKEAQKTRH*
Ga0114916_10212895	F066148	GGAGG	MSNHLSEVAEGIIDACPTQLNPDEMATLIAYMVWSYNMQGDWDDMLPKIVRCINLDDGHARIVRVANRDANKFMDKVLGDISNARRS*
Ga0114916_10212897	F059448	AGGAG	MTDTGFKTIIKVIAKGSWLTDLEVAERAKMKLDAALYYLRRLRRLGLVISEWVHGQRVWSVLNCT*