Basic Information | |
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Taxon OID | 3300008221 Open in IMG/M |
Scaffold ID | Ga0114916_1015955 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2706 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | West Anvers Island | |||||||
Coordinates | Lat. (o) | -64.45 | Long. (o) | -64.88 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014793 | Metagenome / Metatranscriptome | 260 | Y |
F082788 | Metagenome | 113 | N |
F092715 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114916_10159554 | F014793 | N/A | MFEEQVFWKEGFNGEANGGLHFRSFDLNKFIKKVEKDGTEVVGIKFEENNLELIIKNKE* |
Ga0114916_10159556 | F082788 | N/A | MINRDKDMLNYVIKELSNQILYDGHKGSYSNDVAEKIIADYVIETNLVSKEFFHDHWAENKTKTLLNLLNDLYKRYENR* |
Ga0114916_10159557 | F092715 | N/A | MKTDKDFNKLLKVFLKVGWKNITQQQILSLAYIELDKLLPIDDYWESDEHYDVSNLIYDWCLGNSIITQAWLDDTLKHLDDERLMELLPILFKNYKRYDHNTK* |
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