Scaffold Ga0114916_1012839

Overview

Basic Information

• Taxon OID: 3300008221
• Scaffold ID: Ga0114916_1012839
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3157
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028624	Metagenome	191	N
F030152	Metagenome	186	Y
F051967	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114916_10128396	F030152	AGGAG	MTITKAAIQALATQSVKDQYARETDKAIYLESVIDAGGFDISLTDRPDQWDRCIEWLENATA*
Ga0114916_10128397	F051967	AGGAG	MLPRTAQAHTPLRASKSLRTWCGPYAVAVFLRQHYDAAYDACLQFTYRGKITGMSNSLMKVVMGANNVEMTFHYKREIGSYARDNATLATWLKTRDRKKTYLVNITGHYIVVSGDKTIDNQSGEWHSVRKSKHRRKRVAYAWEIKATH*
Ga0114916_10128399	F028624	AGGAG	MIPCTECDHTDYHGKVEKEVHQRFGGTLEPVGEWINCDYCDGSGEVEDEDDER*