Scaffold Ga0114910_1090010

Overview

Basic Information

• Taxon OID: 3300008220
• Scaffold ID: Ga0114910_1090010
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 925
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → Pelagivirus S35C6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.02
  • Long. (^o): 8.37
  • Depth (m): 2641

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005373	Metagenome	403	N
F010573	Metagenome	302	Y
F011339	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114910_10900102	F010573	AGGGGG	MSGFVQDWDCTQCKEGKGFQETFKDTEEGYILECLNCKYMEVYREDVDTGKVVEDYAGYEHYYNNKQAKG*
Ga0114910_10900103	F011339	AGG	MAKHKITDWTITAVVERPDGTWYDHTITDFPEHIGITINEWLQDYKTYEEVSDE*
Ga0114910_10900104	F005373	GAGG	MNEGLENIKQIEDLENKVKTLSDHLAGMCCQADEDTPSEYRTKHFRSTMDDAYEYLEKINYFKRDK*