Scaffold Ga0114910_1059693

Overview

Basic Information

• Taxon OID: 3300008220
• Scaffold ID: Ga0114910_1059693
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1201
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.02
  • Long. (^o): 8.37
  • Depth (m): 2641

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114910_10596932	F105336	AGGAG	MKLRQQQINRVEQILSDLERKVEEMEQQDYITYDLGKDLENISFMIDMLREEIKDE*
Ga0114910_10596933	F021207	AGGAG	MSKRFKQVNIQQFAIFVKELKIGLLTQEEFVYAVEEIYMSIFRHNTDGDFVIPTMPNEEGNWKVHKSSATKEEVMELIKEGRVTWNKDVI*
Ga0114910_10596934	F105326	GGAG	MEQRRNLTPTQHWELHQGLWNMLGCDMQLKHKNKNTVVYVDRKSKRQYTYSTLGFIEEKRYANKKNKKET*