Scaffold Ga0114910_1041041

Overview

Basic Information

• Taxon OID: 3300008220
• Scaffold ID: Ga0114910_1041041
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1517
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.02
  • Long. (^o): 8.37
  • Depth (m): 2641

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025388	Metagenome / Metatranscriptome	202	N
F039091	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114910_10410411	F025388	N/A	IQSALRRFGLNTGSSTFKDGARDYLNLVTQDIASREKWNWLFKGSTFNTVNGTRTYSLASDVVAPLSFRNTTEDHVILIMSTQDIDAADPDASINGDPRWVAIDGVDGSGNIEVTLYPEPDGVDTIAYRYYSSIPTFTVSNDNDSITPYVAAVCQPALIHGISALYKQEKGDDQGALSDKQEMERVIAVAGRQNMNVQGNRTYRMRRADESYSSKFSFTPTEGSLS*
Ga0114910_10410412	F039091	AGGA	MPIAAESLRLGPWRSGVNYSLPAEDMPPDGLYEMENCTVGLAGEVAKRNGFAKYNSSAMNSGATVTACGQVVLAGTEKTFAFAGNKFFDVTGGTATDRTGTVTITAGNDYTWDWVLAGSTLIAVNGQDTDGIKWTGGSANAATLDDDARFTKQSG*