NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114910_1008030

Scaffold Ga0114910_1008030


Overview

Basic Information
Taxon OID3300008220 Open in IMG/M
Scaffold IDGa0114910_1008030 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4071
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.02Long. (o)8.37Alt. (m)Depth (m)2641
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024444Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0114910_10080306F024444GGAMPSQDDYTALLIGAGALVLLAKWGIPKIPNPLPAINEGVRRSAEAVAKGADELTGGLQKSQDESIPEYFFEYDVPFSDKRIPLIPPGLRRDKGSIYTTEGQYTRMDIAEPDQSWGSFLSEVNLPGLPAYDVRDAPADLYQSTIGKVLR*

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