NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114905_1244714

Scaffold Ga0114905_1244714


Overview

Basic Information
Taxon OID3300008219 Open in IMG/M
Scaffold IDGa0114905_1244714 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)566
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)40.24Long. (o)2.3Alt. (m)Depth (m)1876
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011853Metagenome286Y
F042929Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0114905_12447141F042929GAGMMGVWDPGREKTVLSQIKKAMRGPVSGFKAWSGIIGPGILIVFYFFIFFLLLSGCAYFKKEKKDEIIVTDLPPIEFICKKIDCGDEDIDKLVEDEQNTIACIKL
Ga0114905_12447142F011853N/ALIKQHNTLKDKIDEGKTAIANMQAQLNGLVGAVQLCDDFLNNPEEPKKDK*

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