Scaffold Ga0114905_1141678

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1141678
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 807
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F090254	Metagenome	108	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_11416781	F012401	GGAGG	MIEGLLSLEKAALERLTEDRIASGSLGEEVEEILFSAGVYWDEIGQEYFSIDNFQKETFERLAQEYINEDYA*
Ga0114905_11416782	F090254	GAGG	MGIEETNYSAIDILNIVDGAEFVAILREVYLIVWDGGSVLNIYDLTDAGKEPDYQVLPMFAPRCMLTVHDAIDDYFDALDFDNDNEGLTTDPIRVIVNTESDDPLEVN*
Ga0114905_11416783	F106167	GGAG	MQIGDIVRLHINPSVEWMHKYREETFEVIDFPTETGVRVKMIGTDPAWHWIVGKADFKIIEEED*