Scaffold Ga0114905_1115759

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1115759
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 917
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016204	Metagenome	249	Y
F051564	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_11157592	F016204	AGGAGG	MSVKKQYVNILDIKFYVCDEDGNEVLNKDGTIKEFYFKGRLKPLEYLCEDMTVEDLEEVSNVNT*
Ga0114905_11157593	F051564	AGGAGG	MSIPKQMLKEWCETYEEAIETLDYLANRSVGTAKEEIREGLEDYFIDNGLMSEDEFRQEVSDETNYKSCR*