Scaffold Ga0114905_1088150

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1088150
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1089
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038713	Metagenome	165	Y
F041144	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_10881503	F041144	AGGAGG	MLSDAITTVGFALQSYVNTCIHEDTEENRAERVELTLAWSIITKHLKENEDD*
Ga0114905_10881506	F038713	AGGAG	MIFVKFTIDNGWSEAYLDYAWFKDYGLAHYENGESITDKDIIRDVYGEGRSDHDFEENFNEETKVYTDYDDDTIAVHRV