Scaffold Ga0114905_1063616

Overview

Basic Information

• Taxon OID: 3300008219
• Scaffold ID: Ga0114905_1063616
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1332
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013820	Metagenome / Metatranscriptome	268	Y
F022754	Metagenome / Metatranscriptome	213	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_10636161	F048916	AGG	MFLTGCSTAILSELAAPVANFGLGLYNADTYYSKECAWYEEVRLTQDTKQWLLQNNPPEIVSQDLAQVAKNNDIYKQ
Ga0114905_10636163	F022754	N/A	VNELVIAIMLVIPSPYKIVHWTINQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNSKEMIFKSSETDCYAVYDLSSPAFIRHRDFWFPVKHIRR*
Ga0114905_10636164	F013820	AGGAG	MEKIIKPMMKAVDSFMPGYKTYFMMLLGIGMSVCQMMGYHQFDQEAWGILGIGGAATWKMGQDRKKK*